2021
Roger Giné, Jordi Capellades, Josep Ma. Badia, Dennis Vughs, Michaela Schwaiger-Haber, Theodore Alexandrov, Maria Vinaixa, Andrea M. Brunner, Gary J. Patti and Óscar Yanes. HERMES: a molecular-formula-oriented method to target the metabolome. Nature Methods volume 18, pages1370-1376 (2021). DOI: https://doi.org/10.1038/s41592-021-01307-z.
Miriam Valera-Alberni,Magali Joffraud, Joan Miró-Blanch, [...], Óscar Yanes, Carles Cantó. Crosstalk between Drp1 phosphorylation sites during mitochondrial remodeling and their impact on metabolic adaptation. Cell Reports, VOLUME 36, ISSUE 8, 109565, AUGUST 24, 2021. DOI:https://doi.org/10.1016/j.celrep.2021.109565.
Maria Llambrich, Eudald Correig, Josep Gumà , Jesús Brezmes and Raquel Cumeras. Amanida: an R package for meta-analysis of metabolomics non-integral data. Bioinformatics, 2021, 1-3. DOI: https://doi.org/10.1093/bioinformatics/btab591.
Carmen Herranz, Francesca Mateo, Alexandra Baiges, Gorka Ruiz de Garibay, Alexandra Junza, Simon R Johnson, Suzanne Miller, Nadia García, Jordi Capellades,[...] Miquel A Pujana. Histamine signaling and metabolism identify potential biomarkers and therapies for lymphangioleiomyomatosis. EMBO Mol Med (2021)13:e13929. https://doi.org/10.15252/emmm.202113929.
Celia Mallafré-Muro, Maria Llambrich, Raquel Cumeras, Antonio Pardo, Jesús Brezmes, Santiago Marco, Josep Gumà. Comprehensive Volatilome and Metabolome Signatures of Colorectal Cancer in Urine: A Systematic Review and Meta-Analysis. Cancers (Basel). 2021 May 21;13(11):2534. DOI: 10.3390/cancers13112534.
Sonia Torres, Sara Samino, Pere Rafols, Manuela Martins-Green, Xavier Correig, Noelia Ramírez. Unravelling the metabolic alterations of liver damage induced by thirdhand smoke. Environment International, https://doi.org/10.1016/j.envint.2020.106242
Capellades J, Junza A, Samino S, Brunner J S, Schabbauer G, Vinaixa M, Yanes Ó. Exploring the Use of Gas Chromatography Coupled to Chemical Ionization Mass Spectrometry (GC-CI-MS) for Stable Isotope Labeling in Metabolomics. Anal. Chem. 2020. https://doi.org/10.1021/acs.analchem.0c02998.
2020
Fernandez-Cidon B., Candas-Estebanez B., Ribalta J., Rock E., Guardiola-Guionnet M., Amigo N. et al. Precipitated sdLDL: An easy method to estimate LDL particle size. Journal of Clinical Laboratory Analysis. 2020;34(7):-, https://doi.org/ 10.1002/jcla.23282
Carmona-Maurici J., Amigo N., Cuello E., Bermudez M., Baena-Fustegueras J.A., Peinado-Onsurbe J., Pardina E. Bariatric surgery decreases oxidative stress and protein glycosylation in patients with morbid obesity. European Journal of Clinical Investigation. 2020;:-, https://doi.org/ 10.1111/eci.13320
Pinto X., Masana L., Civeira F., Real J., Ibarretxe D., Candas B., Puzo J., Diaz J.L., Amigo N., Esteban M., Valdivielso P. Consensus document of an expert group from the Spanish Society of Arteriosclerosis (SEA) on the clinical use of nuclear magnetic resonance to assess lipoprotein metabolism (Liposcale®) Documento de consenso de un grupo de expertos de la Sociedad Española de Arteriosclerosis (SEA) sobre el uso clínico de la resonancia magnética nuclear en el estudio del metabolismo lipoproteico (Liposcale). Clinica e Investigacion en Arteriosclerosis. 2020;:-, https://doi.org/ 10.1016/j.arteri.2020.04.004
Xiaochen Tang, Noelia Ramírez Gonzalez, Marion L. Russell, Randy L. Maddalena, Lara A. Gundel, Hugo Destaillats. Chemical changes in thirdhand smoke associated with remediation using an ozone generator. Environmental Research, https://doi.org/10.1016/j.envres.2020.110462
Vicente Fresquet, Maria J. Garcia-Barchino, Marta J. Larrayoz, Jon Celay, Carmen Vicente, Marta Fernandez-Galilea, Maria Jose Larrayoz, Maria J. Calasanz, Carlos Panizo, Alexandra Junza, Jiahuai Han, Celia Prior, Puri Fortes, Ruben Pio, Julen Oyarzabal, Álvaro Martínez-Baztán, Bruno Paiva, Maria J Moreno-Aliaga, Maria D Odero, Xabier Agirre, Oscar Yanes, Felipe Prósper and Jose A Martinez-Climent. Endogenous retroelement activation by epigenetic therapy reverses the Warburg effect and elicits mitochondrial-mediated cancer cell death. CANCER DISCOVERY, December 19, 2020. DOI: 10.1158/2159-8290.CD-20-1065.
lakab, SA (Alexandra lakab, Stefania); Semente, L (Semente, Lluc); Garcia-Altares, M (Garcia-Altares, Maria); Correig, X (Correig, Xavier); Rafols, P (Rafols, Pere). Raman2imzML converts Raman imaging data into the standard mass spectrometry imaging format. BMC BIOINFORMATICS 2020, vol. 21, number 1, art. Num. 448; DOI: 10.1186/sl2859-020-03789-8.
Sola Martínez RA, Pastor Hernández JM, Yanes Torrado Ó, Cánovas Díaz M, de Diego Puente T, Vinaixa Crevillent M. Exhaled volatile organic compounds analysis in clinical pediatrics: a systematic review. Pediatr Res. 2020 Sep 12. doi: 10.1038/s41390-020-01116-8. Epub ahead of print. PMID: 32919397.
Ricardo Rodríguez-Calvo, Sara Samino, Josefa Girona, Neus Martínez-Micaelo, Pere Ràfols , María García-Altares, Sandra Guaita-Esteruelas, Alexandra Junza, Mercedes Heras, Oscar Yanes , Xavier Correig and Lluis Masana. Hepatic Lipidomics and Molecular Imaging in a Murine Non-Alcoholic Fatty Liver Disease Model: Insights into Molecular Mechanisms. Biomolecules 2020, 10(9), 1275; https://doi.org/10.3390/biom10091275.
Moncayo, Samuel; lnsenser, Maria; Martinez-Garcia, M Angeles; Fuertes-Martín, Rocío; Amigo-Grau, Nuria; Alvarez-Blasco, Francisco; Luque-Ramirez, Manuel; Correig-Blanchar, Xavier; Escobar-Morreale, Hector F. Acute-phase glycoprotein profile responses to different oral macronutrient challenges: lnfluence of sex, functional hyperandrogenism and obesity. Clinical nutrition (Edinburgh, Scotland). Aug. 2020. D01: 10.1016/j.clnu.2020.08.006.
Baquer, G (Baquer, Gerard); Semente, L (Semente, Lluc); García-Altares, M (García-Altares, Maria); Lee, YJ (Lee, Young Jin); Chaurand, P (Chaurand, Pierre); Correig, X (Correig, Xavier); Rafols, P (Rafols, Pere). rMSlcleanup: an open-source tool for matrix-related peak annotation in mass spectrometry imaging and its application to silver-assisted laser desorption/ionization. JOURNAL OF CHEMINFORMATICS, 21 (1), 45, 2020. D01: 10.1186/s13321-020-00449-0.
Neus Martínez-Micaelo, Carme Ligero, Borja Antequera-González, Alexandra Junza , Oscar Yanes and Josep M. Alegret. Plasma Metabolomic Profiling Associates Bicuspid Aortic Valve Disease and Ascending Aortic Dilation with a Decrease in Antioxidant Capacity. J. Clin. Med. 2020, 9(7), 2215; https://doi.org/10.3390/jcm9072215.
Brunner J.S., Vulliard L., Hofmann M., Kieler M., Lercher A., Vogel A., Russier M. , Brüggenthies J., Kerndl M.1, Saferding V., Niederreiter B., Junza A., Frauenstein A., Scholtysek C., Mikami Y., Klavins K., Krönke G., Bergthaler A., O'Shea JJ., Weichhart T., Meissner F., Smolen JS., Cheng P., Yanes O., Menche J., Murray PJ., Sharif O., Blüml S., Schabbauer G. Environmental arginine controls multinuclear giant cell metabolism and formation. Nature Communications. 2020;11(1):-. Impact factor/Quartile: 11.88/1.
Rodriguez-Borjabad C., Malo A.I., Ibarretxe D., Girona J., Heras M., Ferre R., Feliu A., Salvadó M., Varela A., Amigó N., Masana L., Plana N. Efficacy of therapeutic lifestyle changes on lipid profiles assessed by NMR in children with familial and non-familial hypercholesterolemia. Eficacia de los cambios terapéuticos en el estilo de vida en el perfil lipídico evaluado por RMN en niños con hipercolesterolemia familiar y no familiar. Clínica e Investigación en Arteriosclerosis. 2020;32(2):49-58.
Amigó N., Akinkuolie A.O., Chiuve S.E., Correig X., Cook N.R., Mora S. Habitual Fish Consumption, n-3 Fatty Acids, and Nuclear Magnetic Resonance Lipoprotein Subfractions in Women. Journal of the American Heart Association. 2020;9(5):e014963-. Impact factor/Quartile: 4.66/1.
Lahiguera A., Hyroššová P., Figueras A., Garzón D., Moreno R., Soto‐Cerrato V., McNeish I., Serra V., Lazaro C., Barretina P., Brunet J., Menéndez J., Matias‐Guiu X., Vidal A., Villanueva A., Taylor‐Harding B., Tanaka H., Orsulic S., Junza A., Yanes O., Muñoz‐Pinedo C., Palomero L., Pujana MA., Perales JC., Viñals F. Tumors defective in homologous recombination rely on oxidative metabolism: relevance to treatments with PARP inhibidors. EMBO Mol Med (2020)12:e11217.
Pelletier J., Riaño‐Canalias F., Almacellas E., Mauvezin C., Samino S., Feu S., Menoyo S., Domostegui A., Garcia‐Cajide M., Salazar R., Cortés C., Marcos R., Tauler A., Yanes O., Agell N., Kozma SC., Gentilella A., Thomas G. Nucleotide depletion reveals the impaired ribosome biogenesis checkpoint as a barrier against DNA damage. EMBO J (2020)e103838.
Rafols P., Heijs B., Del Castillo E., Yanes O., McDonnell L.A., Brezmes J., Pérez-Taboada I., Vallejo M., García-Altares M., Correig X. rMSIproc: an R package for mass spectrometry imaging data processing. Bioinformatics (Oxford, England). 2020;36(11):3618-3619.
Iakab S.A., Rafols P., Tajes M., Correig-Blanchar X., Garcia-Altares M. Gold Nanoparticle-Assisted Black Silicon Substrates for Mass Spectrometry Imaging Applications. ACS nano. 2020;14(6):6785-6794.
Abad E., Samino S., Yanes O., Potesil D., Zdrahal Z., Lyakhovich A. Activation of glycogenolysis and glycolysis in breast cancer stem cell models. Biochimica et Biophysica Acta - Molecular Basis of Disease. 2020;1866(10):-.
Insenser M., Moncayo S., Martinez-Garcia M.A., Fernandez-Duran E., Samino S., Alvarez-Blasco F., Luque-Ramírez M., Escobar-Morreale HF. 2D Diffusion-Ordered 1H-NMR Spectroscopy Lipidomic Profiling after Oral Single Macronutrient Loads: Influence of Obesity, Sex, and Female Androgen Excess. Molecular Nutrition and Food Research. 2020;64(9):-.
Plana-Bonamaiso A., Lopez-Begines S., Fernandez-Justel D., Junza A., Soler-Tapia A., Andilla J., Loza-Alvarez P., Rosa JL., Miralles E., Casals I., Yanes O., de la Villa P., Buey RM., Méndez A. Post-translational regulation of retinal IMPDH1 in vivo to adjust GTP synthesis to illumination conditions. eLife. 2020;9:e56418 doi: 10.7554/eLife.56418.
Pallares-Carratala, Vicente; Quesada, Jose A; Orozco-Beltran, Domingo; Amigo-Grau, Nuria; Lopez-Pineda, Adriana; Fernandez Gimenez, Antonio; GilGuillen, Vicente F; Correig, Xavier; Masana, Lluis; Monleon, Daniel; Redan, Josep; Pascual, Reyes; Carratala-Munuera, Concepción. Analysis of LDL and HDL size and number by nuclear magnetic resonance in a healthy working population: the Lipolab Study. lnternational journal of clinical practice, e13610, D01: 10.1111/ijcp.13610. 2020-Jul-10.
Malo, Al (Malo, Ana-Irene); Rull, A (Rull, Anna); Girona, J (Girona, Josefa); Domingo, P (Domingo, Pere); Fuertes-Martin, R (Fuertes-Martin, Rocio); Amigo, N (Amigo, Nuria); Rodriguez-Borjabad, C (Rodriguez-Borjabad, Celia); Martinez-Micaelo, N (Martinez-Micaelo, Neus); Leal, M (Leal, Manuel); Peraire, J. Glycoprotein Profile Assessed by H-1-NMR as a Global lnflammation Marker in Patients with HIV lnfection. A Prospective Study. JOURNAL OF CLINICAL MEDICINE. Vol 9, num. 5, art. 1344. May 2020. DOI: 10.3390/jcm9051344
Parra, S (Parra, Sandra); Heras, M (Heras, Mercedes); Herrero, P (Herrero, Poi); Amigo, N (Amigo, Nuria); Garces, E (Garces, Esperanza); Girona, J (Girona, Josefa); Correig, X (Correig, Xavier); Canela, N (Canela, Nuria); Castro, A (Castro, Antoni). Gelsolin: a new biomarker of disease activity in SLE patients associated with HDL-c . RHEUMATOLOGY, vol. 59, num. 3, 650-661, 2020. DOI: 10.1093/rheumatology/kez293.
Fuertes-Martín, R (Fuertes-Martín, Rocio); Correig, X (Correig, Xavier); Vallve, JC (Vallve, Joan-Carles); Amigo, N (Amigo, Nuria). Human Serum/Plasma Glycoprotein Analysis by H-1-NMR, an Emerging Method of lnflammatory Assessment. JOURNAL OF CLINICAL MEDICINE, vol.9, num. 2, art. 354, 2020. DOI: 10.3390/jcm9020354.
Rodríguez-Calvo, R (Rodríguez-Calvo, Ricardo); Samino, S (Samino, Sara); Guaita-Esteruelas, S (Guaita-Esteruelas, Sandra); Martinez-Micaelo, N (Martinez-Micaelo, Neus); Heras, M (Heras, Mercedes); Girona, J (Girona, Josefa); Yanes, O (Yanes, Osear); Correig, X (Correig, Xavier); Masana, L (Masana, Lluis). Plasma glucose, triglycerides, VLDL, leptin and resistin levels as potential biomarkers for myocardial fat in mice. CLINICA E INVESTIGACION EN ARTERIOSCLEROSIS, vol. 32, num. 1 (8-14), 2020. DOI: 10.1016/j.arteri.2019.05.001.
2019
Cano-Crespo S, Chillarón J, Junza A, Fernández-Miranda G, García J, R. de la Ballina L, Ignatova Z, Yanes Ó, Zorzano A, Stephan-Otto Attolini C, Palacín M. CD98hc (SLC3A2) sustains amino acid and nucleotide availability for cell cycle progression. Sci. Rep. 2019; 9:14065. doi: 10.1038/s41598-019-50547-9.
Miró-Blanch J, Yanes O. Epigenetic Regulation at the Interplay Between Gut Microbiota and Host Metabolism. Front. Genet., 05 July 2019. doi: 10.3389/fgene.2019.00638.
Jervis AJ, Carbonell P, Vinaixa M, Dunstan MS, Hollywood KA, Robinson CJ, Rattray NJW, Yan C, Swainston N, Currin A, Sung R, Toogood H, Taylor S, Faulon JL, Breitling R, Takano E, Scrutton NS. Machine Learning of Designed Translational Control Allows Predictive Pathway Optimization in Escherichia coli. ACS Synth Biol. 2019 Jan 18;8(1):127-136. doi: 10.1021/acssynbio.8b00398. Epub 2019 Jan 7. PMID: 30563328.
Emilia Boiadjieva Knöpfel, Clara Vilches, Simone M. R. Camargo, Ekaitz Errasti-Murugarren, Andrina Stäubli, Clara Mayayo, Francis L. Munier, Nataliya Miroshnikova, Nadège Poncet, Alexandra Junza, Shomi S. Bhattacharya, Esther Prat, Vanita Berry, Wolfgang Berger, Elise Heon, Anthony T. Moore, Óscar Yanes, Virginia Nunes, Manuel Palacín, Francois Verrey, Barbara Kloeckener-Gruissem. Dysfunctional LAT2 Amino Acid Transporter Is Associated With Cataract in Mouse and Humans. Front. Physiol., 04 June 2019. DOI: 10.3389/fphys.2019.00688.
Rodríguez-Calvo R, Girona J, Rodríguez M, Samino S, Barroso E, de Gonzalo-Calvo D, Guaita-Esteruelas S, Heras M, van der Meer RW, Lamb HJ, Yanes O, Correig X, Llorente-Cortés V, Vázquez-Carrera M, Masana L. Fatty acid binding protein 4 (FABP4) as a potential biomarker reflecting myocardial lipid storage in type 2 diabetes. Metabolism. 2019 Jul;96:12-21. doi: 10.1016/j.metabol.2019.04.007. Epub 2019 Apr 15. PMID: 30999003.
Monrroy H, Borghi G, Pribic T, Galan C, Nieto A, Amigo N, Accarino A, Correig X, Azpiroz F. Biological Response to Meal Ingestion: Gender Differences. Nutrients. 2019 Mar 26;11(3). pii: E702. doi: 10.3390/nu11030702. PMID: 3091751.
Valli A, Morotti M, Zois CE, Albers PK, Soga T, Feldinger K, Fischer R, Frejno M, McIntyre A, Bridges E, Haider S, Buffa FM, Baban D, Rodriguez M, Yanes O, Whittington HJ, Lake HA, Zervou S, Lygate CA, Kessler BM, Harris AL. Adaptation to HIF1α Deletion in Hypoxic Cancer Cells by Upregulation of GLUT14 and Creatine Metabolism. Mol Cancer Res. 2019 Mar 18. doi: 10.1158/1541-7786.MCR-18-0315. PMID: 30885992.
Bermudez-Lopez M, Forne C, Amigo N, Bozic M, Arroyo D, Bretones T, Alonso N, Cambray S, Del Pino MD, Mauricio D, Gorriz JL, Fernandez E, Valdivielso JM. An in-depth analysis shows a hidden atherogenic lipoprotein profile in non-diabetic chronic kidney disease patients. Expert Opin Ther Targets. 2019 Jul;23(7):619-630. doi: 10.1080/14728222.2019.1620206. Epub 2019 May 23.PMID: 31100024.
Hernandez-Alonso P., Giardina S., Canueto D., Salas-Salvado J., Canellas N., Bullo M. Changes in Plasma Metabolite Concentrations after a Low-Glycemic Index Diet Intervention. Molecular Nutrition and Food Research, Volume 63, Issue 1, 2019, PMID: 29603657 DOI: 10.1002/mnfr.201700975 SCOPUS ID: 85046551163.
Monrroy H., Pribic T., Galan C., Nieto A., Amigo N., Accarino A., Correig X., Azpiroz F. Meal Enjoyment and Tolerance in Women and Men. Nutrients, Volume 11, Issue 1, 2019, PMID: 30626147 DOI: 10.3390/nu11010119 SCOPUS ID: 85059795146.
Llinas-Arias P., Rossello-Tortella M., Lopez-Serra P., Perez-Salvia M., Setien F., Marin S., Munoz J.P., Junza A., Capellades J., Calleja-Cervantes M.E., Ferreira H.J., Castro de Moura M., Srbic M., Martinez-Cardus A., de la Torre C., Villanueva A., Cascante M., Yanes O., Zorzano A., Moutinho C., Esteller M. Epigenetic loss of the endoplasmic reticulum-associated degradation inhibitor SVIP induces cancer cell metabolic reprogramming. JCI insight, Volume 5, 2019, PMID: 30843871 DOI: 10.1172/jci.insight.125888 SCOPUS ID: 85062598400.
Oriol Senan, Antoni Aguilar-Mogas , Miriam Navarro, Jordi Capellades, Luke Noon, Deborah Burks, Oscar Yanes, Roger Guimerà, and Marta Sales-Pardo. CliqueMS: A computational tool for annotating in-source metabolite ions from LC-MS untargeted metabolomics data based on a coelution similarity network. Bioinformatics. 2019 Mar 23. DOI: 10.1093/bioinformatics/btz207, PMID: 30903689.